Index

A

assign_ID_and_type() (in module croco.KojakFunctions)

availReads (croco_wx.CroCoMainFrame attribute) availWrites (croco_wx.CroCoMainFrame attribute)

C

col_order (croco_wx.CroCoMainFrame attribute) compactTableCheck (croco_wx.CroCoMainFrame attribute) create_widgets() (croco_wx.CroCoMainFrame method) croco.customTable (module) croco.DynamXL (module) croco.Kojak (module) croco.KojakFunctions (module) croco.KojakPercolator (module) croco.pLabel (module) croco.pLink1 (module) croco.pLink2 (module)

croco.StavroX (module) croco.Xi (module) croco.xiNET (module) croco.XiSearchFDR (module) croco.xQuest (module) croco.xTable (module) croco.xVis (module) croco.xWalk (module) CroCoMainFrame (class in croco_wx) CroCoOptionsFrame (class in croco_wx) currentPath (croco_wx.CroCoMainFrame attribute) (croco_wx.CroCoOptionsFrame attribute)

D

display_info() (croco_wx.CroCoMainFrame method) (croco_wx.CroCoOptionsFrame method)

display_warning() (croco_wx.CroCoMainFrame method)

E

extract_peptide() (in module croco.KojakFunctions)

extract_protein() (in module croco.KojakFunctions)

I

InputOptionsToAsk (croco_wx.CroCoOptionsFrame attribute), [1]

inputOptionsToUserInput (croco_wx.CroCoMainFrame attribute)

M

make_menu_bar() (croco_wx.CroCoMainFrame method)

mergeTableCheck (croco_wx.CroCoMainFrame attribute)

O

on_about() (croco_wx.CroCoMainFrame method) on_exit() (croco_wx.CroCoMainFrame method) on_input_dir() (croco_wx.CroCoMainFrame method) on_input_file() (croco_wx.CroCoMainFrame method) on_okay() (croco_wx.CroCoOptionsFrame method) on_open_dir() (croco_wx.CroCoOptionsFrame method) on_open_file() (croco_wx.CroCoOptionsFrame method)

on_open_switch() (croco_wx.CroCoMainFrame method) on_output_dir() (croco_wx.CroCoMainFrame method) on_read_format() (croco_wx.CroCoMainFrame method) on_run() (croco_wx.CroCoMainFrame method) on_start() (croco_wx.CroCoMainFrame method) on_write_format() (croco_wx.CroCoMainFrame method) outputOptionsToUserInput (croco_wx.CroCoMainFrame attribute)

P

parent (croco_wx.CroCoOptionsFrame attribute)

process_kojak_peptide() (in module croco.KojakFunctions)

R

Read() (in module croco.Kojak) (in module croco.KojakPercolator) (in module croco.StavroX) (in module croco.Xi) (in module croco.XiSearchFDR) (in module croco.pLink1) (in module croco.pLink2) (in module croco.xQuest) (in module croco.xTable)

readFormat (croco_wx.CroCoMainFrame attribute) readSet (croco_wx.CroCoMainFrame attribute)

S

sameSettingsCheck (croco_wx.CroCoMainFrame attribute)

set_decoy() (in module croco.KojakFunctions)

T

textCtrls (croco_wx.CroCoOptionsFrame attribute)

theInput (croco_wx.CroCoMainFrame attribute) theOutput (croco_wx.CroCoMainFrame attribute)

U

update_options() (croco_wx.CroCoOptionsFrame method)

W

Write() (in module croco.customTable) (in module croco.DynamXL) (in module croco.pLabel) (in module croco.xTable) (in module croco.xVis) (in module croco.xWalk) (in module croco.xiNET)

writeFormat (croco_wx.CroCoMainFrame attribute) writeSet (croco_wx.CroCoMainFrame attribute)